Dmytro Kryvokhyzha
Bioinformatician
Current position
Bioinformatician
Current project/position
Dmytro provides bioinformtics support to researchers at LUDC. He is involved in multiple research projects as well as training of LUDC staff in the selection and use of bioinformatics tools. He leads all aspects of bioinformatics pipeline development, implementation, and management, to support next-generation sequencing (NGS) analyses, including but not limited to RNA-seq, GWAS, microbiome and multi-omics.
Background
Dmytro obtained his Ph.D. from Uppsala University, where he worked on population genetics and comparative genomics of a polyploid plant species. During his post-doc, he studied diet adaptation in dogs. He has a long experience in genomic (SNP, copy-number, indels) and transcriptomc (RNA-Seq, microarray) data analyses. His interests include reproducible research, high-performance computing, and Big Data analyses. He is an expert in Linux, Python, and R.
Publications
Displaying of publications. Sorted by year, then title.
How broad is the selfing syndrome? Insights from convergent evolution of gene expression across species and tissues in the Capsella genus
Zebin Zhang, Dmytro Kryvokhyzha, Marion Orsucci, Sylvain Glémin, Pascal Milesi, et al.
(2022) New Phytologist, 236 p.2344-2357
Journal articleMyocardin regulates exon usage in smooth muscle cells through induction of splicing regulatory factors
Li Liu, Dmytro Kryvokhyzha, Catarina Rippe, Aishwarya Jacob, Andrea Borreguero-Muñoz, et al.
(2022) Cellular and Molecular Life Sciences, 79
Journal articleShort-term lingonberry feeding is associated with decreased insulin levels and altered adipose tissue function in high-fat diet fed C57BL/6J mice
Dorota Kotowska, Mathis Neuhaus, Lovisa Heyman-Lindén, Björn Morén, Shuyi Li, et al.
(2022) Journal of Functional Foods, 94 p.1-8
Journal articleHigh-throughput muscle fiber typing from RNA sequencing data
Nikolay Oskolkov, Malgorzata Santel, Hemang M. Parikh, Ola Ekström, Gray J. Camp, et al.
(2022) Skeletal Muscle, 12 p.1-9
Journal articleGenetic variation at RAB3GAP2 and its role in exercise-related adaptation and recovery
Kristoffer Ström, Nikolay Oskolkov, Tugce Karaderi, Sebastian Kalamajski, Ola Ekström, et al.
(2021) , p.1-16
PreprintRegulation of the Muscarinic M3 Receptor by Myocardin-Related Transcription Factors
Li Liu, Catarina Rippe, Ola Hansson, Dmytro Kryvokhyzha, Steven Fisher, et al.
(2021) Frontiers in Physiology, 12 p.1-18
Journal articleThe genetic consequences of dog breed formation - Accumulation of deleterious genetic variation and fixation of mutations associated with myxomatous mitral valve disease in cavalier King Charles spaniels
Erik Axelsson, Ingrid Ljungvall, Priyasma Bhoumik, Laura Bas Conn, Eva Muren, et al.
(2021) PLoS Genetics, 17 p.1-34
Journal article